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4. PhenoTempDev - Phenotypic Temperature Deviation

PhenoTempDev provides comparison of features of each allele between two different temperatures with customized parameters, such as cell and subcellular compartment and bud size etc.

4.1. Starting PhenoTempDev with default settings

i). The easy way to use PhenoTempDev is that user can directly press the " Run PhenoTempDev" button with default settings.


4.2. Starting PhenoTempDev with customized settings

All parameters are grouped into 4 steps according to parameter type.

i). In " Step 1", cell and subcellular compartment parameter is selected in this step.
Cell parameter include Cell and Mother Daughter features.
Subcellular compartment parameter includes Actin, Dna damage, Nucleus, Mitochondria, Plasma membrane and Spindle features.

ii). In " Step 2", bud size parameter is selected in this step.
Bud size includes unbud, small bud, medium bud and large bud ( HELP).

iii). In " Step 3", Ontology and Set Cutoff is selected in this step.
This database integrated a function of go enrichment analysis implemented by GO-TermFinder.
The genes of top fifty hit alleles in PhenoTempDev result are used to execute go enrichment analysis.

iv). In " Step 4", PhenoTempDev result count is selected in this step.
PhenoTempDev result count means how many rows will show in the result page?


Powered By Boone, Andrews and Zhang Labs
Last database updated September 8, 2011 PhenoM 1.0